Reassortment of Swine H1N2 and Pandemic H1N1 in Pigs, United States

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Pandemic H1N1 (pan-H1N1) influenza virus was first reported in Mexico during April of 2009 followed by rapid spread to different countries (1). Although the origin of the 2009 pan-H1N1 is unclear, the virus is genetically closely related to triple reassortant (TR) swine influenza viruses (SIVs) currently circulating in swine. Classic H1N1 SIV has been widely reported since an influenza-like outbreak was first detected in swine in the United States (U.S.) during the catastrophic 1918 human influenza pandemic (2). The classic H1N1 SIVs were exclusively prevalent among swine populations in the U.S. before novel TR H3N2 viruses emerged in 1998. Genes of TR H3N2 viruses were derived from human, swine and avian lineage viruses. This specific constellation of internal genes is referred to as the TR internal gene (TRIG) (3). Currently, classical, TR and human-like H1 viruses are circulating in the U.S. swine population (4). Pigs are susceptible to influenza viruses of different origins and they are considered as mixing vessels for genetic reassortment(3), thus co-circulation of different influenza strains including pan-H1N1 viruses in swine increase the potential of novel reassortants emergence (4, 5), and recent reports further highlight the reassortment events between swine and pandH1N1 viruses (6, 7).

Here we report the isolation of novel reassortant H1N2 influenza viruses with genes derived from contemporary swine and the 2009 pandH1N1 viruses. In October and November 2010, oral fluid samples were collected from 5-month-old and 8-week-old nursery pigs, respectively, showing mild respiratory signs of cough and depression. The farms are 30 miles apart with different servicemen. Filtered samples were inoculated into Madin Darby canine k...

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...f both origin. Compared to the pan-H1N1 and all other reported swine/pandH1N1 reassortants, the two U.S. reassortant isolates demonstrated one (E16G) and four (G34A, D53E, I109T, and V313I) unique amino acid changes in the M2 and NP proteins, respectively, which warrants further investigation regarding the role of those amino acids in relation to host adaptation.

The remaining four internal genes, PB2, PB1, PA, and NS, were similar to the composition of the contemporary swine TRIG (data not shown).

To our knowledge the new isolates are the first swine and pandH1N1 reassortant identified in the U.S. The reassortment of pan-H1N1 with swine influenza viruses indicates the importance of systematic surveillance of swine population to determine the origin, the prevalence of similar reassortants in the U.S. and their impact on both swine production and public health.

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