Exploring Proteins

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Exploring Proteins

Different proteins can appear very different and perform diverse

functions (e.g. the water-soluble antibodies involved in the immune

system and the water-insoluble keratin of hair, hooves and feathers).

Despite this, each one is made up of amino acid subunits.

There about 20 different amino acids that all have a similar chemical

structure but behave in very different ways because they have

different side groups. Hence, stringing them together in different

combinations produces very different proteins.

Each amino acid has an amino group (NH2) and a carboxylic acid group

(COOH). The R group is a different molecule in different amino acids

which can make them neutral, acidic, alkaline, aromatic (has a ring

structure) or sulphur-containing.

When 2 amino acids are joined together (condensation) the amino group

from one and the acid group from another form a bond, producing one

molecule of water. The bond formed is called a peptide bond.

Hydrolysis is the opposite of condensation and is the breaking of a

peptide bond using a molecule of water.

Primary structure of proteins

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Due to the bonding and the shape and chemical nature of different

amino acids, the shape of a whole chain of amino acids (a polypeptide

or protein) is specific.

This will affect the properties of the protein, just as the type of a

necklace depends on the type of beads and how they are strung

together. Therefore, the primary structure depends on the order and

number of amino acids in a particular protein.

For example: Haemoglobin is made up of 4 polypeptide chains, 2a chains

and 2b chains, each with a haem group attached. There are 146 amino

acids in each chain. If just one of these is wrong, serious problems

can arise (e.g. sickle cell anaemia). The red blood cells become

distorted, the amount of oxygen they can carry is reduced and blood

capillaries can be blocked, leading to acute pains called crises.

Secondary structure of proteins

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This is the basic shape that the chain of amino acids takes on.

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