Microsatellites Essay

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Recently, attention has been turned to another type of genetic variation that of differences in the number of repeated copies of a segment of DNA. These sequences can be classified based on decreasing sizes into satellites, minisatellites and microsatellites (Tautz, 1993). Satellites consist of units of several thousand base pairs, repeated thousands or millions of times. Minisatellites consist of DNA sequences of some 9-100bp in length that is repeated from 2 to several 100 times at a locus. Minisatellites discovered in human insulin gene loci with repeat unit lengths between 10 and 64 bp were also referred to as ‘Variable Number of Tandem Repeats’ (VNTRs) DNA (Nakamura et al., 1987). Microsatellites have a unique length of 1-6 bp repeated up to about 100 times at each locus (Litt and Luty, 1989). They are also called as ‘simple sequence repeat’ (SSR) by Tautz (1989) or ‘short tandem repeat’ (STR) DNA by Edwards et al. (1991). Jeffreys et al. (1988) and Weber (1990) opined that length variations in tandemly arrayed repetitive DNA in mini and microsatellites is usually due to increase or decrease of repeat unit copy numbers. These differences in repeat numbers represent the base for most DNA profiling techniques used today.
Microsatellites are short tandemly arrayed di-, tri-, or tetra- nucleotide repeat sequences with repeat size of 1-6 bp repeated several times flanked by regions of non-repetitive unique DNA sequences (Tautz, 1989). Polymorphism at microsatellite loci was first demonstrated by Tautz (1989) and Weber and May (1989). Alleles at microsatellite loci can be amplified by the polymerase chain reaction (Saiki et al., 1988) from small samples of genomic DNA and the alleles separated and accurately sized on a polyacryla...

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...riants that could compromise microsatellite population level links (and comparisons of levels of variation across species for homologous loci) and phylogenetic inferences as these length variants in the flanking regions can potentially minimize allele length variation in the repeat region (Zardoya et al., 1996).

Microsatellites have become the genetic markers of choice for studies of population differentiation and parentage determination. However, several microsatellite loci are required for such studies in order to obtain an appropriate amount of genetic polymorphism (Herbinger et al., 1995; Ferguson et al., 1995). Fortunately, genotypic data collection has become efficient through the development of automated DNA sizing technology using fluorescent-labelled DNA and co-amplification of multiple loci in a single PCR (O’Connell and Wright, 1997; Smith et al., 1997).

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